Basic Information
VIS ID
TVIS30004012
Fusion event
HIV-DNAJC2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
102980942/103340495 (Hg38)
End
102980942/103340495 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
DNAJC2
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-155-5p ; hsa-mir-30a-5p ; hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-10525/Upstream/868964; hsa-mir-10399/Downstream/11312850;
Nearest TSS
ENST00000635602/Upstream/15765; ENST00000457587/Downstream/1442;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/59428, chr7-CpG: 40/Downstream/3915
Upstream sequence
gttttatacatatgctttagcttatttagtcctctaaacaaccaatgacataggaactcttattatccattatttgtttggcatttatcatgcagcaagt
Downstream sequence
actaacttaagtgctttataagcatccttttattaatcctcaaggtaaacctttgagctgttaacaatctcactgtagcaacaagggaaatgaggtacac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate