VISDB Viral Integration Site DataBase

VIS ID

TVIS30004016

Fusion event

HIV-HBP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q22.3

Reference genome

Start

End

106818750/107178305 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-19b-3p ; hsa-mir-17-5p ; hsa-mir-29a-3p ; hsa-mir-17-3p ; hsa-mir-9-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-130a-3p ; hsa-mir-106b-5p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-454-3p ; hsa-mir-766-5p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-4524b-3p ; hsa-mir-6513-3p ; hsa-mir-19a-3p ; hsa-mir-32-3p ; hsa-mir-196a-3p ; hsa-mir-648 ; hsa-mir-1468-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-4282 ; hsa-mir-548aj-5p ; hsa-mir-4688 ; hsa-mir-548aw ; hsa-mir-6507-5p ; hsa-mir-6743-5p ; hsa-mir-6789-5p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-let-7a-3p ; hsa-let-7b-3p ; hsa-let-7f-1-3p ; hsa-mir-98-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-7702 ; hsa-mir-6515-5p ; hsa-mir-4443 ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-4684-3p ; hsa-mir-6894-5p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-2909 ; hsa-mir-4278 ; hsa-mir-6824-5p ; hsa-mir-4666a-3p ; hsa-mir-6813-5p ; hsa-mir-6085

Nearest miRNA

hsa-mir-10525/Upstream/4706774; hsa-mir-10399/Downstream/7475040;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/8421, chr7-CpG: 59/Downstream/385364

Nearest cancer related gene

HBP1(TSG, No orient, 0)

Upstream sequence

gctacattgcccaggctggattccaacgcataggctgaagttgtcgtcccccttcagtctaccctaagtagctggaactataggcatgagctactgcatc

Downstream sequence

aggcTAGAACTTTTTTAAAAAATGGAATTTAGACTAGAGCCTGAGAAATCAGAAAAATCTTACCATTGTTGCTTATGTTAAATAAAGAACTAATTCGATC