Basic Information
VIS ID
TVIS30004017
Fusion event
HIV-CBLL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
107389086/107748641 (Hg38)
End
107389086/107748641 (Hg38)
Orient
-
Location type
Intronic
Target gene
CBLL1
miRNAs that regulate target gene
hsa-mir-203a-3p ; hsa-mir-26b-5p ; hsa-mir-6807-5p ; hsa-mir-7158-5p ; hsa-mir-7157-3p ; hsa-mir-6737-3p ; hsa-mir-5008-3p ; hsa-mir-6751-3p ; hsa-mir-1199-5p
Nearest miRNA
hsa-mir-10525/Upstream/5277110; hsa-mir-10399/Downstream/6904704;
Nearest TSS
ENST00000635602/Upstream/4060; ENST00000485066/Downstream/28111;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/4065, chr7-CpG: 51/Downstream/142394
Nearest cancer related gene
CBLL1(OG, No orient, 0)
Upstream sequence
TAGTTCAAGACAATGGTTCTTGGGTTCATTAATGGTTTCATGTTTCTGTAAACTTCTCTGGAATTATATGAAAAATTTTATTCACttttctagggagagg
Downstream sequence
tcctataacttttatcaatttcttaaaggattctgtatctcaaaaggggttaaaaagcattgCCTTAAGTGTTGATCCAAAATAAATAAAATTAGCAGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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