Basic Information
VIS ID
TVIS30004022
Fusion event
HIV-LOC105375483 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.32
Reference genome
GRCh37/hg19
Start
123644013/124003959 (Hg38)
End
123644013/124003959 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375483
Nearest miRNA
hsa-mir-10525/Upstream/6983640; hsa-mir-10399/Downstream/3054129;
Nearest TSS
ENST00000635602/Upstream/9328; ENST00000497598/Downstream/28246;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/254390, chr7-CpG: 179/Downstream/28050
Nearby gene
TMEM229A(No orient, 26957)
Upstream sequence
gtctttatttgaagctgacttcttgtctctggtttcagaggtgggtatgttagtaaggtatttttggtgtggaagctttggggtatgatccagcaggtga
Downstream sequence
cacttaggcctattggtcagttggtagattcttgctctgttgtgtggctcccctatatttcctcacagttgcagctgtgttacccctcagtgctctgaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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