VISDB Viral Integration Site DataBase

VIS ID

TVIS30004024

Fusion event

HIV-AHCYL2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q32.1

Reference genome

Start

End

129056272/129416431 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-185-5p ; hsa-mir-92a-3p ; hsa-mir-4531 ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4650-3p ; hsa-mir-3132 ; hsa-mir-197-5p ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-3185 ; hsa-mir-4768-3p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-6755-5p ; hsa-mir-3123 ; hsa-mir-5197-3p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-3202 ; hsa-mir-6862-3p ; hsa-mir-6784-3p ; hsa-mir-4532 ; hsa-mir-6895-5p ; hsa-mir-1273e ; hsa-mir-6807-5p ; hsa-mir-3672 ; hsa-mir-6864-3p ; hsa-mir-6894-5p ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-4649-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-1277-5p ; hsa-mir-3924 ; hsa-mir-1277-3p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-3976 ; hsa-mir-6868-3p ; hsa-mir-3124-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-670-3p ; hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-1285-3p ; hsa-mir-196a-3p ; hsa-mir-3187-5p ; hsa-mir-3606-5p ; hsa-mir-5189-5p ; hsa-mir-612 ; hsa-mir-661 ; hsa-mir-6732-3p ; hsa-mir-6849-3p ; hsa-mir-6860 ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-10525/Upstream/1208488; hsa-mir-10399/Downstream/353952;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/190617, chr7-CpG: 94/Downstream/17450

Upstream sequence

tctaccctcatggagcttatatcatagtgagaagaaaataaacataataaatatgtaaaatttatactatgttagaaggcaaaagcaccacagaaaaaag

Downstream sequence

aaaaagtagagcatggtgggagaattgagcactggattataatttgaaatagatcaggctgtgacccttattaagaatatgatgagccgggcccagtggc