Basic Information
VIS ID
TVIS30004029
Fusion event
HIV-LINC-PINT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
130612524/130927765 (Hg38)
End
130612524/130927765 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7H
Target gene
LINC-PINT
Nearest miRNA
hsa-mir-10525/Upstream/50226; hsa-mir-10399/Downstream/2107095;
Nearest TSS
ENST00000635602/Upstream/14455; ENST00000608412/Downstream/4441;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/193389, chr7-CpG: 215/Downstream/177834
Nearby gene
LINC00513(No orient, 5819)
Nearest cancer related gene
LINC-PINT(TSG, No orient, 0)
Upstream sequence
GGGTCCCGACCTGTATCACCACAGGGTCACAGAAATGGAACCTTCTCCGTCACACCTCCTGATGGCAGTCAGCTGTGACCCGCTGAATCCAGGACATCAT
Downstream sequence
GCATTCCAGTTTCATTTGCGAGAACATTTCCAGGTCCGGCTGAAGCCTAGTGGCTCCAGCAGAGGTCTCAACCCCTTTGGGATGCTCAGTGGGAGACAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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