Basic Information
VIS ID
TVIS30004037
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
131712662/132027903 (Hg38)
End
131712662/132027903 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7H
Nearest miRNA
hsa-mir-10525/Upstream/1150364; hsa-mir-10399/Downstream/1006957;
Nearest TSS
ENST00000635602/Upstream/117683; ENST00000445459/Downstream/117604;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/82166, chr7-CpG: 168/Downstream/547812
Nearby gene
LOC101928782(No orient, 78950)
Upstream sequence
GAATCTGGAGCTCTAAATTCTCTGAGACCAGGAACCAGACCTTGAATGCCTTCCTGCTTAAAGTGTTAGAGCTGATCTCTTAGGCCCTGAATGAAGTATT
Downstream sequence
TCAAATACTCTGAAACTTATCCTTTGTCAATACTCATAGCCAGAAGAAAGTAAATTAATCATGAACAtcgatttgctcatctgtctctttctctagactt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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