Basic Information
VIS ID
TVIS30004044
Fusion event
HIV-LOC112267988 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q35
Reference genome
GRCh37/hg19
Start
143546494/143849401 (Hg38)
End
143546494/143849401 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC112267988
Nearest miRNA
hsa-mir-10399/Upstream/466601; hsa-mir-153-2/Downstream/3528616;
Nearest TSS
ENST00000635602/Upstream/91705; ENST00000408955/Downstream/33482;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/11942, chr7-CpG: 36/Downstream/35631
Nearby gene
TCAF1(No orient, 1967)
Upstream sequence
ataactgaaacagaatacagaacagaaataaatccatgcacttacagccaactgattttcaacaaaagtgtcagcaacatgcattaggaaaaggagaggc
Downstream sequence
ttttcaatagatggcactgggaaaactgaatatccacatgtagaagaataaaattagacccctgtctcttaccatatgtaaaaattagttcaaaattgat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate