Basic Information
VIS ID
TVIS30004045
Fusion event
HIV-LOC105375551 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q35
Reference genome
GRCh37/hg19
Start
144752926/145055833 (Hg38)
End
144752926/145055833 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375551
Nearest miRNA
hsa-mir-10399/Upstream/1673033; hsa-mir-153-2/Downstream/2322184;
Nearest TSS
ENST00000635602/Upstream/219438; ENST00000637105/Downstream/625536;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/219673, chr7-CpG: 70/Downstream/1060349
Nearby gene
TPK1(No orient, 219780)
Upstream sequence
CCAATTTCTTACTCTCTGATTGCTGCATAGTATTTTTAATCAATATTGCACAATATAATACCTCTTTATAATAAAAAACTAACATATATAAATTGATCTC
Downstream sequence
AGAAGTTCTTTAGAAAACATTTTTAGAGCTAACTTTGTTACTGTTTCAAAAAAAAATTTAGTGAGCTCAACttcattcattcatcagatttttattttga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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