Basic Information
VIS ID
TVIS30004061
Fusion event
HIV-GIMAP1-GIMAP5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
150426945/150729857 (Hg38)
End
150426945/150729857 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
GIMAP1-GIMAP5
Nearest miRNA
hsa-mir-10399/Upstream/3351736; hsa-mir-153-2/Downstream/508564;
Nearest TSS
ENST00000635602/Upstream/7604; ENST00000469272/Downstream/7491;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/8927, chr7-CpG: 124/Downstream/69864
Upstream sequence
gacctggtgggaagtgtttgggtcatgggagtggatccttcatagaaggattggtgctgtcctcactgcagtgagtgagacctggttatttggaagtgtg
Downstream sequence
tagcacctcccccacactttgctgttactctcatcgtgtgacatgcaggctcccctttgtcttccacaatgattggaagcctcctgaggccctcaccaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate