Basic Information
VIS ID
TVIS30004062
Fusion event
HIV-NUB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
151042654/151345568 (Hg38)
End
151042654/151345568 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
NUB1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-183-5p ; hsa-mir-10a-5p
Nearest miRNA
hsa-mir-10399/Upstream/107030; hsa-mir-153-2/Downstream/87921;
Nearest TSS
ENST00000635602/Upstream/223; ENST00000477666/Downstream/5552;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/3518, chr7-CpG: 108/Downstream/35808
Upstream sequence
ATTTTTCTTTTAAGACATCAATAATTAGCAGCATTATAAATCTCCTTGGTAAATAAGATTCTGAATTGTCAGGCATGACCATATAAACTTTTGGCATAAC
Downstream sequence
CAAAAGCATTAGTGGTGAGCGGGTACCCACTTTTTACTAGGAACTGACAACCTTATTTTTGTTCATTAATATTTTATTCACATGAGGATGTTATCTAATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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