VISDB Viral Integration Site DataBase

VIS ID

TVIS30004064

Fusion event

HIV-NOM1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q36.3

Reference genome

Start

End

156747926/156955232 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-590-3p ; hsa-mir-6516-5p ; hsa-mir-4451 ; hsa-mir-455-3p ; hsa-mir-6799-5p ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4500 ; hsa-mir-98-5p ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-1247-3p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-3149 ; hsa-mir-4776-3p ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-5590-5p ; hsa-mir-4633-5p ; hsa-mir-4775 ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-4735-5p ; hsa-mir-532-5p ; hsa-mir-296-3p ; hsa-mir-4662a-3p ; hsa-mir-302c-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-3143 ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-585-3p ; hsa-mir-4486 ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-1306-5p ; hsa-mir-543 ; hsa-mir-491-3p ; hsa-mir-3163 ; hsa-mir-586 ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-4286 ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-216a-5p ; hsa-mir-106a-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-6722-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-652-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-129-5p ; hsa-mir-514b-3p ; hsa-mir-4645-3p ; hsa-mir-514a-3p ; hsa-mir-192-3p ; hsa-mir-5189-3p ; hsa-mir-7162-3p ; hsa-mir-544b ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p

Nearest miRNA

hsa-mir-10399/Upstream/5521593; hsa-mir-153-2/Downstream/619104;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/4852, chr7-CpG: 26/Downstream/12952

Upstream sequence

gtaaatgtCCACCCCACCCCCACATCCCTTTCGTATTCTTCTTGCTCCACAACCCTTGTGGTTAAAGTCAGAGAGGCTCTTTGGTGATGGCCTTGGTTCC

Downstream sequence

ACAGTCACTGCCCTCTTCTGGGCCTGTTCTCTCTTAATTGAATACAGGAAAGTCATAACACTCCCAGTCAGTATCCCAGTTCCCCCAAGGTAGCTGATTT