Basic Information
VIS ID
TVIS30004070
Fusion event
HIV-FDFT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p23.1
Reference genome
GRCh37/hg19
Start
11673447/11815938 (Hg38)
End
11673447/11815938 (Hg38)
Orient
-
Location type
Intronic
Target gene
FDFT1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-26b-5p ; hsa-mir-760 ; hsa-mir-149-5p ; hsa-mir-140-3p ; hsa-mir-3692-3p ; hsa-mir-4269 ; hsa-mir-4514 ; hsa-mir-4692 ; hsa-mir-4742-5p ; hsa-mir-498 ; hsa-mir-6715b-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-940 ; hsa-mir-1976 ; hsa-mir-2681-5p ; hsa-mir-3653-5p ; hsa-mir-4258 ; hsa-mir-4279 ; hsa-mir-4438 ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-5095 ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6778-3p ; hsa-mir-7151-3p ; hsa-mir-7849-3p
Nearest miRNA
hsa-mir-124-1/Upstream/780636; hsa-mir-10400/Downstream/903194;
Nearest TSS
ENST00000518652/Upstream/6682; ENST00000528729/Downstream/5843;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/7139, chr8-CpG: 65/Downstream/51612
Upstream sequence
tttcttttgctgtgcagaagctctttagttgaattagatcccatttgtctagtttggcttttgttgccattgcttttggtgttttagtcatgaagtcttt
Downstream sequence
gcccatgcctatgtcctgaatggtattgactgcattttcttctagggtttttacggttttaggccttatatttaagccttcagtccatcttgagttaatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate