Basic Information
VIS ID
TVIS30004083
Fusion event
HIV-KIF13B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37/hg19
Start
29036042/29178525 (Hg38)
End
29036042/29178525 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIF13B
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-124-1/Upstream/673343; hsa-mir-10400/Downstream/778747;
Nearest TSS
ENST00000518652/Upstream/38481; ENST00000521101/Downstream/84537;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/106324, chr8-CpG: 97/Downstream/83915
Upstream sequence
CATACAGATACATAGATATCTTTATCAAAAGTGTTTTCTTATCAAGCACATACATGTAACATACTTCGTACTTCAATAGCAATATAAGGAATGTAGGAAA
Downstream sequence
CCAACACCAAAATCTATAGACTGAATCATTTTTAAAGCTTTCCTTTAAAATAGACATTTATTTCCATAAATAAACATGCTGTTAACAAAAGGTTATTCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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