VISDB Viral Integration Site DataBase

VIS ID

TVIS30004087

Fusion event

HIV-ANK1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

p11.21

Reference genome

Start

End

41615546/41758028 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-513b-5p ; hsa-mir-597-5p ; hsa-mir-6747-5p ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-206 ; hsa-mir-613 ; hsa-mir-1-3p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-4802-5p ; hsa-mir-6732-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-663b ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-7106-5p ; hsa-mir-6825-5p ; hsa-mir-874-5p ; hsa-mir-6894-5p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-3605-5p ; hsa-mir-1204 ; hsa-mir-1247-3p ; hsa-mir-5587-3p ; hsa-mir-6840-5p ; hsa-mir-2392 ; hsa-mir-1273e ; hsa-mir-4709-3p ; hsa-mir-4684-5p ; hsa-mir-4635 ; hsa-mir-942-5p ; hsa-mir-877-3p ; hsa-mir-376c-3p ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-202-3p

Nearest miRNA

hsa-mir-124-1/Upstream/97520; hsa-mir-10400/Downstream/1138169;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/32022, chr8-CpG: 61/Downstream/8826

Upstream sequence

GAGGCCACTGAGAAAAGGTTAATAGAGGCAGTTTCAAAGCTCTCAGGAAATGGCATCAGGCAAGAGCTACTCTTCAGAGACAACAGGCCTGCCTCCATCC

Downstream sequence

CACTTACCTGGTTACAGGTGTTAATATCTACCCCATTCCGCAGGTGATCCAAAGCTTTGTCCAAGTTACCTGATCTTGCTGCTCTCAGAAAGCTGGTAGC