Basic Information
VIS ID
TVIS30004092
Fusion event
HIV-SNTG1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
51517915/50605355 (Hg38)
End
51517915/50605355 (Hg38)
Orient
-
Location type
Intronic
Target gene
SNTG1
miRNAs that regulate target gene
hsa-mir-2681-5p ; hsa-mir-548c-3p ; hsa-mir-7977 ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-3671 ; hsa-mir-6849-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p
Nearest miRNA
hsa-mir-124-1/Upstream/7709080; hsa-mir-10400/Downstream/11109433;
Nearest TSS
ENST00000518652/Upstream/52305; ENST00000642377/Downstream/38486;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/695055, chr8-CpG: 98/Downstream/803247
Upstream sequence
tccctaggtcaggtgtttccctgttccactggctctaagcccagcctagcactaggaattccataggaatgtcagtccttgtggcttagactgcctttca
Downstream sequence
actttacttaggatgctggagcattttagactgcagtggtgaggcttgccaaaactcaagttctgatatctgggatgggtaattcctttctggctgctcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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