Basic Information
VIS ID
TVIS30004097
Fusion event
HIV-LOC107984125 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
55729235/54816675 (Hg38)
End
55729235/54816675 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984125
Nearest miRNA
hsa-mir-124-1/Upstream/11920400; hsa-mir-10400/Downstream/6898113;
Nearest TSS
ENST00000518652/Upstream/200608; ENST00000522559/Downstream/285714;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/195202, chr8-CpG: 222/Downstream/284421
Nearby gene
RP1(No orient, 185841)
Upstream sequence
cttgccttcatttccaacatcgccatcagggtcaccaccttctcttgcccagactcatgtactagtctcttacatagtctctcctggcttttactattac
Downstream sequence
ttccttgccatccttcttttgcagaacagtcaaggaaatcttttagaaacataaactggaacatgttatctcctgctttaaatcctcacatggcttcaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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