Basic Information
VIS ID
TVIS30004098
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
55926525/55013965 (Hg38)
End
55926525/55013965 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/12117690; hsa-mir-10400/Downstream/6700823;
Nearest TSS
ENST00000518652/Upstream/397898; ENST00000522559/Downstream/88424;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/392492, chr8-CpG: 222/Downstream/87131
Nearby gene
XKR4(No orient, 88492)
Upstream sequence
ttatagatgagaaagttaggtcaccgagagCAGCCTAGATTGAAATTCACACTGGGCTCCCCTAGACCGACAGCTCCCTCCTCTTCCCAGAATGATAAAC
Downstream sequence
GGCCTTGGAAGCAACAAATCAACATGAAGCGGGCAATGCCAGTTGTATTCCCACTTCTTCGCCTTATATTTTACTAGCAAACTGCTCAAAATTTCTTTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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