Basic Information
VIS ID
TVIS30004099
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
59579260/58666701 (Hg38)
End
59579260/58666701 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/15770426; hsa-mir-10400/Downstream/3048087;
Nearest TSS
ENST00000518652/Upstream/6857; ENST00000523683/Downstream/452339;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/6734, chr8-CpG: 175/Downstream/450874
Nearby gene
NSMAF(No orient, 6856)
Upstream sequence
AAGCCGCCAGGCAGAAGCAGGTTGGGAATGGCTCCCGGGTCAGTCAATCTGCAACGTGTACCCCATTACTAAAATGAAAACTAGCCAGGAATACATATTG
Downstream sequence
ATACTTATTCTTAAGGAAGATGACACCTGAGACTATTATTTTTTTCTTTACATCGTCTTCATTAAAAGGtattgactatttattgtatgccaggaaatgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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