Basic Information
VIS ID
TVIS30004103
Fusion event
HIV-C8orf34 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
69520335/68608100 (Hg38)
End
69520335/68608100 (Hg38)
Orient
-
Location type
Intronic
Target gene
C8orf34
Nearest miRNA
hsa-mir-124-1/Upstream/4228843; hsa-mir-10400/Downstream/5940443;
Nearest TSS
ENST00000518652/Upstream/75080; ENST00000325233/Downstream/17359;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/276532, chr8-CpG: 224/Downstream/1223763
Upstream sequence
TCTGGTCAAAAAATGAACAGATAGTAGGAAACAATATAGTAGTTTTTATTAATTTATTCACTCtcattcattcaacaagcttttactgtgtgctgggcag
Downstream sequence
agaagtagacaccaaatgcagaaaaaaaaacaataaaacttggactctgtcttcaagttctgtactctgtatgtgggaaagaaagatgtgtcaagcaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate