Basic Information
VIS ID
TVIS30004104
Fusion event
HIV-UBE2W integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.11
Reference genome
End
74772903/73860668 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-124-1/Upstream/9481411; hsa-mir-10400/Downstream/687875;
Upstream sequence
GAGGTAAAACATGATACGGAGGCACACAAGGTACTAAAAAGTATGTACAGCTGTGAGGATGAGGCTAAGGTTGGTGGATTTATGATGTCAAAGTATTGAG
Downstream sequence
TTACAAAGAACTAAAGTGGATTTTGAGTAAAATTTGAATTCAGGAAGAAAGTTCAAAGAGTGGAGGGGCTAACTAAATGATCTGCTAGGTAAGTTTTAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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