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VISDB
Viral Integration Site DataBase
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TVIS30004104
Basic Information
VIS ID
TVIS30004104
Fusion event
HIV-UBE2W integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
74772903/73860668 (Hg38)
End
74772903/73860668 (Hg38)
Orient
+
Location type
Intronic
Target gene
UBE2W
miRNAs that regulate target gene
hsa-mir-142-3p
;
hsa-mir-132-3p
;
hsa-mir-128-3p
;
hsa-mir-215-5p
;
hsa-mir-192-5p
;
hsa-mir-32-5p
;
hsa-mir-218-5p
;
hsa-mir-382-3p
;
hsa-mir-5692a
;
hsa-mir-548c-3p
;
hsa-mir-3185
;
hsa-mir-141-5p
;
hsa-mir-5197-3p
;
hsa-mir-4652-3p
;
hsa-mir-4743-3p
;
hsa-mir-6888-3p
;
hsa-mir-431-5p
;
hsa-mir-3120-5p
;
hsa-mir-4760-3p
;
hsa-mir-8087
;
hsa-mir-7161-5p
;
hsa-mir-548u
Nearest miRNA
hsa-mir-124-1/Upstream/9481411; hsa-mir-10400/Downstream/687875;
Nearest TSS
ENST00000518652/Upstream/30194;
ENST00000523794/Downstream/18157;
Nearest CpG islands
None/Target,
chr8-CpG: 109/Upstream/113075
,
chr8-CpG: 109/Downstream/17439
Upstream sequence
GAGGTAAAACATGATACGGAGGCACACAAGGTACTAAAAAGTATGTACAGCTGTGAGGATGAGGCTAAGGTTGGTGGATTTATGATGTCAAAGTATTGAG
Downstream sequence
TTACAAAGAACTAAAGTGGATTTTGAGTAAAATTTGAATTCAGGAAGAAAGTTCAAAGAGTGGAGGGGCTAACTAAATGATCTGCTAGGTAAGTTTTAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Active CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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