Basic Information
VIS ID
TVIS30004111
Fusion event
HIV-RALYL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
85682505/84770270 (Hg38)
End
85682505/84770270 (Hg38)
Orient
-
Location type
Intronic
Target gene
RALYL
Nearest miRNA
hsa-mir-12123/Upstream/4528797; hsa-mir-10400/Downstream/6435215;
Nearest TSS
ENST00000518652/Upstream/64334; ENST00000518065/Downstream/102212;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/585258, chr8-CpG: 47/Downstream/336800
Upstream sequence
tttttagtcttttacccttcaccccctcccaccttttcccccgagtccccaaagtccattgtatcattcttatgccttcatatctccatagcttagctcc
Downstream sequence
cacttatgagtgagaacacacgatgtttggttttctattcctgtgttgctttacttagaataacagcctccagttccatccagattgctgcaaatggcag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate