Basic Information
VIS ID
TVIS30004112
Fusion event
HIV-CPNE3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
87559178/86546950 (Hg38)
End
87559178/86546950 (Hg38)
Orient
-
Location type
Intronic
Target gene
CPNE3
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-133b ; hsa-mir-451a ; hsa-mir-4774-5p ; hsa-mir-1245b-3p ; hsa-mir-582-3p ; hsa-mir-548c-3p
Nearest miRNA
hsa-mir-12123/Upstream/6305477; hsa-mir-10400/Downstream/4658535;
Nearest TSS
ENST00000518652/Upstream/322; ENST00000523588/Downstream/356;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/31906, chr8-CpG: 25/Downstream/1326993
Upstream sequence
caggcacccaccactacacctggctaatttttgtatttttagtggagacagggtttcaccatgttggccaggctggtcttgaactcctgaccttgtgatc
Downstream sequence
cacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccgcatccgaccCAAGCCTTGGCTACTTATAATATAATGAGATTATATTTCAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate