Basic Information
VIS ID
TVIS30004113
Fusion event
HIV-LOC105375630 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
89413695/88401466 (Hg38)
End
89413695/88401466 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375630
Nearest miRNA
hsa-mir-12123/Upstream/8159993; hsa-mir-10400/Downstream/2804019;
Nearest TSS
ENST00000518652/Upstream/73441; ENST00000518631/Downstream/141138;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/73214, chr8-CpG: 92/Downstream/1355841
Nearby gene
MMP16(No orient, 73978)
Upstream sequence
atgccttctccaacaaggtctgtatcttggcccaggaggaacgtcttccttgggcactctagttcagccctaagggtagtggttgctccttataagtatt
Downstream sequence
gtttattctttattctctccacttcttactagccagtactttgctagtctaatttacttttagagttaattattcttaatattaactttgtctgctaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate