Basic Information
VIS ID
TVIS30004115
Fusion event
HIV-PIP4P2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
92023643/91011415 (Hg38)
End
92023643/91011415 (Hg38)
Orient
-
Location type
Intronic
Target gene
PIP4P2
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-1200 ; hsa-mir-378a-5p ; hsa-mir-4427 ; hsa-mir-3140-5p ; hsa-mir-4704-5p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6802-3p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-500b-3p ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-5692a ; hsa-mir-548c-3p ; hsa-mir-6727-5p ; hsa-mir-7977 ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-4746-3p ; hsa-mir-342-3p ; hsa-mir-383-3p ; hsa-mir-1228-3p
Nearest miRNA
hsa-mir-12123/Upstream/10769942; hsa-mir-10400/Downstream/194070;
Nearest TSS
ENST00000518652/Upstream/26158; ENST00000517920/Downstream/5173;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/25737, chr8-CpG: 57/Downstream/58593
Upstream sequence
agaccatgggccctacagaaatgtaatagtaaactctgctgttcagttgtgttaagaaacttctttgcatttatggagaactagctaaaggctttataag
Downstream sequence
tcaattcattcttctggGAAATTAtttttcaaacaatgcccttcaaatcaccactcaggctagatgatctcaaaatggtttggagggtaaaaaatgtttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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