Basic Information
VIS ID
TVIS30004117
Fusion event
HIV-RAD54B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
95435975/94423747 (Hg38)
End
95435975/94423747 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA8B
Target gene
RAD54B
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-346
Nearest miRNA
hsa-mir-12123/Upstream/507628; hsa-mir-10400/Downstream/649164;
Nearest TSS
ENST00000518652/Upstream/16080; ENST00000521010/Downstream/13195;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/161320, chr8-CpG: 36/Downstream/50955
Upstream sequence
GTCATGGGTTATTTTCGTTGTTTTACCAAGCCCGATCTTCCCAGATAAAGTTTTGAGGTTTTTAGCATTAACAAAAGACAGAATACTTCAATTAGCTTTT
Downstream sequence
GAACTCTTTTCACACAAATTTTGCTGTGTGCAATTTTAGTCAATTTTAATTAGTTTTCTTTTTGTATTATTTCTACCAGTAGCAGTCACTGTGCATTGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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