Basic Information
VIS ID
TVIS30004125
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
115522122/114509893 (Hg38)
End
115522122/114509893 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/1866310; hsa-mir-10400/Downstream/2364835;
Nearest TSS
ENST00000518652/Upstream/227757; ENST00000415088/Downstream/982328;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1077037, chr8-CpG: 33/Downstream/1138312
Nearby gene
TRPS1(No orient, 898602)
Upstream sequence
aaccaaacaccgcatattctcactcataggtgggaattgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgtggtggggt
Downstream sequence
tgggggagggaggagggaaagcattgggagatatacctaatgctagatgacgagttagtgggtgcagcgcaccagtatggcacatgtatacatatgtaac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate