Basic Information
VIS ID
TVIS30004131
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
126853073/125840829 (Hg38)
End
126853073/125840829 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA8C ; FRA8E
Nearest miRNA
hsa-mir-12123/Upstream/1018771; hsa-mir-10400/Downstream/1955133;
Nearest TSS
ENST00000518652/Upstream/90588; ENST00000500180/Downstream/110321;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/408631, chr8-CpG: 180/Downstream/715602
Nearby gene
LINC00861(No orient, 81694)
Upstream sequence
tctcactgacatccctgaaagagaaggagagaaaagaagcaacttggaaaacacatttgaagatattgtcatgaaaatttccccaaccttgctagaaagg
Downstream sequence
gtaacattcaaattcaggaaatgcagagaacccctgaaagatactatacaagatgaccaaccccaagacactcgtcttcagaatcttcaaggtcaacatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate