Basic Information
VIS ID
TVIS30004132
Fusion event
HIV-LINC00861 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
126941367/125929123 (Hg38)
End
126941367/125929123 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
LINC00861
Nearest miRNA
hsa-mir-12123/Upstream/1107065; hsa-mir-10400/Downstream/1866839;
Nearest TSS
ENST00000518652/Upstream/178882; ENST00000500180/Downstream/22027;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/496925, chr8-CpG: 180/Downstream/627308
Upstream sequence
TCAGAAACAAAACCTTCATTTTTCAATGTGAAGGAAGTTTTTTTTGTGTGTTTTTGTTTTGTTTCCCCATGGTTTTGAGTTTTCCAACTTTCTTGCTTTC
Downstream sequence
CCTCCTGGGCTAAAAATCCCATAAATTTCCTTCAACTgatttccagctcaattatgcaaactcaagagacttgtgtagcttGAATGCATTAGAAGATAAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate