Basic Information
VIS ID
TVIS30004133
Fusion event
HIV-CASC19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
128207337/127195092 (Hg38)
End
128207337/127195092 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
CASC19
Nearest miRNA
hsa-mir-12123/Upstream/2373034; hsa-mir-10400/Downstream/600870;
Nearest TSS
ENST00000518652/Upstream/115218; ENST00000642795/Downstream/49545;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/636567, chr8-CpG: 29/Downstream/120550
Upstream sequence
ttgcattaaataatatcaaataattaaaaattttcacaaattgcatttttaactcagtcttttataagattgccaataatgatatctcttcagatcattc
Downstream sequence
attttgactattatattatttttcattgtatgactatgccatggctcacttatccattctgttattgataaacatttgtgttgtttccacaattttgcta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate