Basic Information
VIS ID
TVIS30004134
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
129292865/128280619 (Hg38)
End
129292865/128280619 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1204/Upstream/130431; hsa-mir-10400/Downstream/1203438;
Nearest TSS
ENST00000518652/Upstream/184100; ENST00000519048/Downstream/685382;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/430641, chr8-CpG: 122/Downstream/1658507
Nearby gene
LINC00824(No orient, 124651)
Upstream sequence
aatcctattgacgctattctacaagatagaggaagagggaatactacttaaatcattctagaaagccagtatcaccctaatactaaaatcaaggaaggac
Downstream sequence
atacaaaaaaggaaaactacagaccaatatccctgatgagcacagattcaaaaatccacaacaaaatactagctaacagaatccaacagcatgtcaaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate