Basic Information
VIS ID
TVIS30004136
Fusion event
HIV-LINC02055 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.23
Reference genome
GRCh37/hg19
Start
137907187/136894944 (Hg38)
End
137907187/136894944 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02055
Nearest miRNA
hsa-mir-1204/Upstream/2089999; hsa-mir-10400/Downstream/3837620;
Nearest TSS
ENST00000518652/Upstream/97671; ENST00000519652/Downstream/957383;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1436845, chr8-CpG: 119/Downstream/1601608
Nearby gene
LOC101927915(No orient, 511157)
Upstream sequence
catgccaagttctcaggatcactaatccctctgcagaagggatctgccctagatgttgctgtgactgcccttttcttattgcttatgttaccactcaaat
Downstream sequence
gttacttctcagaaaggatcactctctgaaagtagtgcccacatcacaaacaacgtgtgctccctttactttgtgtatatatatatatatcttattctta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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