Basic Information
VIS ID
TVIS30004137
Fusion event
HIV-COL22A1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.23
Reference genome
GRCh37/hg19
Start
139756640/138744397 (Hg38)
End
139756640/138744397 (Hg38)
Orient
-
Location type
Intronic
Target gene
COL22A1
miRNAs that regulate target gene
hsa-mir-5587-5p ; hsa-mir-432-3p ; hsa-mir-4436b-5p ; hsa-mir-197-3p ; hsa-mir-1193 ; hsa-mir-6500-3p
Nearest miRNA
hsa-mir-1204/Upstream/3939452; hsa-mir-10400/Downstream/1988167;
Nearest TSS
ENST00000518652/Upstream/22204; ENST00000518354/Downstream/35165;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/246866, chr8-CpG: 60/Downstream/133241
Upstream sequence
AACAATAATGAGACCCTTGGTTCCAAGCGAAAGGCAGGGATTAAGCTGATGTGTGCCCAGTGCATCCTATCGGACAGGCATGGTCAGGTATTGAGGGTCC
Downstream sequence
TAGATCTATTCAAAGCATGCACAGCAAGGACAGTTAACTTCCATGTTAGAATTCTGATATGCACATGGATacacacacacacaccacacacacacacaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate