Basic Information
VIS ID
TVIS30004139
Fusion event
HIV-ZC3H3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
144539726/143457556 (Hg38)
End
144539726/143457556 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA8D
Target gene
ZC3H3
miRNAs that regulate target gene
hsa-mir-615-3p ; hsa-mir-18a-3p
Nearest miRNA
hsa-mir-1204/Upstream/1281138; hsa-mir-10400/Downstream/275527;
Nearest TSS
ENST00000518652/Upstream/27150; ENST00000517300/Downstream/50284;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/18118, chr8-CpG: 17/Downstream/12854
Upstream sequence
cttggtggctcatacctataatctcagcactttgggaggctgaggcggatggactcttaagctcaggagtttgagaccaacctgggcaacatagcgagac
Downstream sequence
ctcatccctataaaaaaatacaaaaaTTAgccaggtgtggtagcagggacctgtagtctcagctacttgggaggctgaggtgggaagcctgcttgaggcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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