Basic Information
VIS ID
TVIS30004151
Fusion event
HIV-RLN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
5335459/5335459 (Hg38)
End
5335459/5335459 (Hg38)
Orient
+
Location type
Exonic
Target gene
RLN1
miRNAs that regulate target gene
hsa-mir-6509-5p ; hsa-mir-4795-3p ; hsa-mir-3924 ; hsa-mir-331-5p ; hsa-mir-4742-3p ; hsa-mir-1183 ; hsa-mir-1258
Nearest miRNA
hsa-mir-101-2/Upstream/485084; hsa-let-7a-1/Downstream/672367;
Nearest TSS
ENST00000422679/Upstream/30490; ENST00000474218/Downstream/3937;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/30983, chr9-CpG: 45/Downstream/3567
Upstream sequence
TATTTTAATTCTGAAGGATTGCTGTCTGCGGCTTCACTTTGCCTATTGCGAATAAGTTTCTTAAATTCTTCAAAGCTAAGATTGGAATCCTTTAATGCAG
Downstream sequence
GTACATACTGCTGTAGCTCTGGTAATGATGGTTGCCTCTCAGATAGGGCTGCCTTCAGCTCCGGTGGCAAATTAGCAATGAATTCCAACATGATAATTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate