VISDB Viral Integration Site DataBase

VIS ID

TVIS30004155

Fusion event

HIV-SNAPC3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

p22.3

Reference genome

Start

End

15458368/15458370 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-659-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-29b-2-5p ; hsa-mir-665 ; hsa-mir-6514-3p ; hsa-mir-6771-5p ; hsa-mir-7977 ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-564 ; hsa-mir-4268 ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6746-5p ; hsa-mir-4267 ; hsa-mir-6736-3p ; hsa-mir-6767-3p ; hsa-mir-1247-3p ; hsa-mir-1273e ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-219b-3p ; hsa-mir-2467-3p ; hsa-mir-302f ; hsa-mir-3160-3p ; hsa-mir-3612 ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-4649-3p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-5186 ; hsa-mir-558 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-101-2/Upstream/9450466; hsa-let-7a-1/Downstream/3114936;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/35168, chr9-CpG: 107/Downstream/51808

Upstream sequence

CCAGGGATAGGTCAAATTTCAGGCTTGTAAAATGTATACAGCTAGGTGAATAAAAATAAAAGTCACTAGTGTTAAGCAAAGCaaagaattctctgataga

Downstream sequence

atacattcaagaaaagctctgtacaataactccctgttagagggtcacagtgcacattaccataaagggatttgggaagtctaaccaaagaaaaccttgt