Basic Information
VIS ID
TVIS30004156
Fusion event
HIV-PSIP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
15480013/15480015 (Hg38)
End
15480013/15480015 (Hg38)
Orient
+
Location type
Intronic
Target gene
PSIP1
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-375 ; hsa-mir-155-5p ; hsa-mir-1-3p
Nearest miRNA
hsa-mir-101-2/Upstream/9472111; hsa-let-7a-1/Downstream/3093291;
Nearest TSS
ENST00000422679/Upstream/5814; ENST00000474193/Downstream/30274;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/56813, chr9-CpG: 107/Downstream/30163
Nearest cancer related gene
PSIP1(OG, No orient, 0)
Upstream sequence
GTCATTTGTAAAAATAAAGCTAATATTCTTGATGCGATATGGAGAACAAAGTATGTGATTACACTGCAACTAACACAATGTTATTTCTAATTCTTCGTTC
Downstream sequence
ATACAGACACATTTTATTTCTAAACTGAGACTGTTACCTAACAGTTCTCCTTTAGGAGTTATTCTTATTTCCCGTAAGAAAGGATTTACTACAACAGAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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