Basic Information
VIS ID
TVIS30004163
Fusion event
HIV-KIF24 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
34312338/34312340 (Hg38)
End
34312338/34312340 (Hg38)
Orient
+
Location type
Intronic
Target gene
KIF24
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-7-5p ; hsa-mir-192-5p ; hsa-mir-1229-3p ; hsa-mir-125b-5p
Nearest miRNA
hsa-mir-101-2/Upstream/844405; hsa-let-7a-1/Downstream/1295754;
Nearest TSS
ENST00000422679/Upstream/969; ENST00000346365/Downstream/17166;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/132858, chr9-CpG: 54/Downstream/5944
Upstream sequence
tgcccaggaaattaatactaaggtcaagattttaaatagttgtatcttttaaaaaattttaatatcaagatatttaattaaatactaacaaataatgtgg
Downstream sequence
taataacacataatcctggtctattattaaaagtcaggatcctgagctctctatatcactgttaatcaagttcatgagaatatccaaaagtaaatacagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate