Basic Information
VIS ID
TVIS30004169
Fusion event
HIV-ZFAND5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
74976690/72361774 (Hg38)
End
74976690/72361774 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZFAND5
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-19b-3p ; hsa-mir-18a-5p ; hsa-mir-769-3p ; hsa-mir-320a ; hsa-mir-15b-5p ; hsa-let-7e-5p ; hsa-mir-455-5p ; hsa-mir-10a-5p ; hsa-mir-222-3p ; hsa-mir-496 ; hsa-mir-4742-3p ; hsa-mir-216b-5p ; hsa-mir-7158-3p ; hsa-mir-4517 ; hsa-mir-19a-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-4293 ; hsa-mir-4433a-3p ; hsa-mir-4434 ; hsa-mir-4459 ; hsa-mir-4516 ; hsa-mir-4531 ; hsa-mir-4738-3p ; hsa-mir-4802-3p ; hsa-mir-548g-3p ; hsa-mir-5703
Nearest miRNA
hsa-mir-101-2/Upstream/1551690; hsa-let-7a-1/Downstream/11607974;
Nearest TSS
ENST00000422679/Upstream/1489; ENST00000643676/Downstream/2572;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/211787, chr9-CpG: 176/Downstream/2455
Upstream sequence
AAGCATTTGTTTCCAAGGAAGATTTGCTTTTCTAAAAGTCTTGTTAAAACGCTGTGCTAAATTATTAATAAGTTTTCCTCTGGATGAGAAAATACatatt
Downstream sequence
aaagaaaaattattttaaaataaaGTTGTGGAGGGTTTTCATGTCATCTTAAACATGTATAAGCATATGTACAAAAAGCATATTTGAGAGCATTTGCTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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