Basic Information
VIS ID
TVIS30004170
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
77763852/75148936 (Hg38)
End
77763852/75148936 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/4338852; hsa-let-7a-1/Downstream/8820812;
Nearest TSS
ENST00000422679/Upstream/60393; ENST00000455583/Downstream/430733;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/60033, chr9-CpG: 148/Downstream/741378
Nearby gene
OSTF1(No orient, 1738)
Upstream sequence
CACCCTTTAAATAGGAAATGCCTTCCAGCTACTTGGGCAGTGCGATACTTGTTTAGTTGTAGGCCCAGGAGCCTCATGCAAAGAAAAATTCTTATCAGAG
Downstream sequence
GTTCCCATTTCAGTTTTCTTTCTGGGCTGTTCTGTTGCACATTTTGTTGTTGTTGGGCTGACATGTATTACAGCATTTCTTTATAAGCCCCCATGGCTCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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