Basic Information
VIS ID
TVIS30004171
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
78114160/75499244 (Hg38)
End
78114160/75499244 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/4689160; hsa-let-7a-1/Downstream/8470504;
Nearest TSS
ENST00000422679/Upstream/410701; ENST00000455583/Downstream/80425;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/410341, chr9-CpG: 148/Downstream/391070
Nearby gene
MIR548H3(No orient, 4352)
Upstream sequence
agctctgGCTGCAGGAATACACATTGATCAGAAGCTTCTAGATGATTTTATGGCAAAACACCTCAAATGGAAATCTGTATCTTCACATTAAAAGTAAAAG
Downstream sequence
CAAGAAAAGAAAAATCTTGAACAACCTTTTATAAATAAATGGAAGGGAACAAACATATCAACATGAAATTAAATTGTAGGCTAATGAATAAACATATGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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