Basic Information
VIS ID
TVIS30004174
Fusion event
HIV-LOC107987087 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
85316038/82701123 (Hg38)
End
85316038/82701123 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107987087
Nearest miRNA
hsa-mir-101-2/Upstream/11891039; hsa-let-7a-1/Downstream/1268625;
Nearest TSS
ENST00000422679/Upstream/249467; ENST00000416473/Downstream/362005;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1011037, chr9-CpG: 137/Downstream/360977
Nearby gene
RASEF(No orient, 278462)
Upstream sequence
acctggccaatttttaaattgattgtgagggcaaaatgaagttcttttcagaaagacaacatcttaaaatgttgctgctctggaaccctttttgaagaag
Downstream sequence
atacttagagttgttgaactccaggaaaataaatatgagcaccaaaaataagaaatgagaccaagaagcaaatgagataacccacaagccccatgaagag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate