Basic Information
VIS ID
TVIS30004175
Fusion event
HIV-TUT7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
88909870/86294955 (Hg38)
End
88909870/86294955 (Hg38)
Orient
-
Location type
Intronic
Target gene
TUT7
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-629-5p
Nearest miRNA
hsa-mir-101-2/Upstream/2325098; hsa-let-7a-1/Downstream/2450881;
Nearest TSS
ENST00000422679/Upstream/11853; ENST00000438582/Downstream/24689;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/12149, chr9-CpG: 85/Downstream/59137
Upstream sequence
gcattaggtataaaaaaaaaaagtaatttttaattaaaatttgtaacatttgttttgatcaattatatattctaataattgtgaaaactcaatatagaag
Downstream sequence
atattttcatcctttgagatttaataaaaagcttaaaaattcaatttatagaaaatagggcctagcttgttgcccctgtcatttttgttgcagataagca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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