Basic Information
VIS ID
TVIS30004177
Fusion event
HIV-AUH integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
94039336/91277054 (Hg38)
End
94039336/91277054 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA9D
Target gene
AUH
miRNAs that regulate target gene
hsa-mir-9-5p ; hsa-mir-183-5p
Nearest miRNA
hsa-mir-101-2/Upstream/1253519; hsa-let-7a-1/Downstream/359197;
Nearest TSS
ENST00000422679/Upstream/56135; ENST00000442072/Downstream/79067;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/82916, chr9-CpG: 74/Downstream/84457
Upstream sequence
tgggaaaatcgtttgagcccaggagctcaagaccagcctgggcaatatagcaagacactcatctccacaaaaatttttttaaaaaaccagccaggtgtgg
Downstream sequence
tagggcatacctgtaatcccagctacttggaatgccgagatgggaagatcagttgagcccaggagttccaggttacagGGTAAGACCCTATCTCTAAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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