VISDB Viral Integration Site DataBase

VIS ID

TVIS30004183

Fusion event

HIV-ZNF367 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q22.32

Reference genome

Start

End

99158985/96396703 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-99a-5p ; hsa-mir-4517 ; hsa-mir-1468-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-548aj-5p ; hsa-mir-548aw ; hsa-mir-338-5p ; hsa-mir-3161 ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-646 ; hsa-mir-139-5p ; hsa-mir-497-5p ; hsa-mir-195-5p ; hsa-mir-15a-5p ; hsa-mir-424-5p ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-302c-5p ; hsa-mir-3143 ; hsa-mir-203a-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-4291 ; hsa-mir-539-5p ; hsa-mir-545-3p ; hsa-mir-1252-3p ; hsa-mir-24-2-5p ; hsa-mir-24-1-5p ; hsa-mir-409-3p ; hsa-mir-4735-3p ; hsa-mir-18a-5p ; hsa-mir-18b-5p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-4703-3p ; hsa-mir-7852-3p ; hsa-mir-3668

Nearest miRNA

hsa-let-7a-1/Upstream/1310609; hsa-mir-12126/Downstream/966851;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/12900, chr9-CpG: 228/Downstream/20494

Upstream sequence

tgaaagacaatatgaaccacttctagaaggcacattagaaaaagtaaagagaaagaggtgaaataaatttttttttttttttgagattgagttttgttct

Downstream sequence

tgttgcccaggctggagtgcaatgtcacatcttggctcaccgcaacctccacctcccgggttcaagtgattctcctgcctcagtttcccgagtaactgag