VISDB Viral Integration Site DataBase

VIS ID

TVIS30004184

Fusion event

HIV-CDC14B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q22.32

Reference genome

Start

End

99258669/96496387 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-3591-5p ; hsa-mir-3611 ; hsa-mir-142-3p ; hsa-mir-1257 ; hsa-mir-4255 ; hsa-mir-369-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-8084 ; hsa-mir-6746-5p ; hsa-mir-4533 ; hsa-mir-6516-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-455-3p ; hsa-mir-6731-5p ; hsa-mir-8085 ; hsa-mir-6878-5p ; hsa-mir-5192 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-4722-5p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-6770-5p ; hsa-mir-3192-5p ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-7851-3p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-490-3p ; hsa-mir-6888-3p ; hsa-mir-4284 ; hsa-mir-3120-5p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-6796-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-4252 ; hsa-mir-4638-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-1292-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-3529-3p ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-452-3p ; hsa-mir-542-3p ; hsa-mir-302a-5p ; hsa-mir-3919 ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-4634 ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-1206 ; hsa-mir-150-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-3664-3p ; hsa-mir-3929 ; hsa-mir-4279 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4695-5p ; hsa-mir-4722-3p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-562 ; hsa-mir-5690 ; hsa-mir-5697 ; hsa-mir-665 ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6778-3p ; hsa-mir-6814-5p ; hsa-mir-7160-5p

Nearest miRNA

hsa-let-7a-1/Upstream/1410293; hsa-mir-12126/Downstream/867167;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/45162, chr9-CpG: 61/Downstream/125

Nearby gene

CDC14B(No orient, 3726)

Upstream sequence

TAGTCCTTGTGGATCCCGAGCCAGATCAGAAGCCGGTCTAGAAAGGTGACAGCCTGGGACAGCCAACCATCGCTGGAAAAGGGAGGAGATGGACAGCGCT

Downstream sequence

GTACTTaccaccaccaccaccaccacAGGGCCTGTCTCAGGGCTTGAGTTTGTGTGGACGGCAAGGACTAGCTTCCTGGGCCGCTAACTCTCAACCGCAA