VISDB Viral Integration Site DataBase

VIS ID

TVIS30004187

Fusion event

HIV-ANP32B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q22.33

Reference genome

Start

End

100751786/97989504 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-877-3p ; hsa-mir-193b-3p ; hsa-mir-320a ; hsa-let-7a-2-3p ; hsa-mir-129-5p ; hsa-let-7g-3p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-3613-5p ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548bb-5p ; hsa-mir-206 ; hsa-mir-613 ; hsa-mir-4476 ; hsa-mir-6876-5p ; hsa-mir-3163 ; hsa-mir-1277-5p ; hsa-mir-548c-3p ; hsa-let-7c-3p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-493-5p ; hsa-mir-6741-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-8057 ; hsa-mir-6844 ; hsa-mir-513a-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6822-3p ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-513b-3p ; hsa-mir-873-5p ; hsa-mir-760 ; hsa-mir-9-5p ; hsa-mir-1343-3p ; hsa-mir-193b-5p ; hsa-mir-3149 ; hsa-mir-3170 ; hsa-mir-5087 ; hsa-mir-5690 ; hsa-mir-6742-3p ; hsa-mir-6782-3p ; hsa-mir-6783-3p ; hsa-mir-6852-5p ; hsa-mir-6855-5p ; hsa-mir-7155-5p ; hsa-mir-939-3p

Nearest miRNA

hsa-let-7a-1/Upstream/625823; hsa-mir-12126/Downstream/239645;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/4018, chr9-CpG: 51/Downstream/66943

Upstream sequence

tttgagaaaaggcaagtttaattggagcatgagggaagaagaggagTGAATTTGGCCCCAAAAGTTAAACTGTCCATCTTCAAGCAGAAGGCCAGTTAAC

Downstream sequence

TCTTGGATCAAATAGATCCCTCAGATTTAAGCACAAATGAACAAGTGCCTGCCTAACTTTCTTCATTAGATAGCAGCTCTGGGAGGATTTGAGATATAAG