Basic Information
VIS ID
TVIS30004188
Fusion event
HIV-NANS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
100826225/98063943 (Hg38)
End
100826225/98063943 (Hg38)
Orient
-
Location type
Intronic
Target gene
NANS
miRNAs that regulate target gene
hsa-mir-324-5p
Nearest miRNA
hsa-let-7a-1/Upstream/700262; hsa-mir-12126/Downstream/165206;
Nearest TSS
ENST00000422679/Upstream/7173; ENST00000415280/Downstream/10700;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/6857, chr9-CpG: 89/Downstream/23474
Upstream sequence
GTTTttttgtgctaataagtagtgctgagatagacatcttttctctgtttggggttgtttccttaagatggcttcttagaaatagatttttaggtaaaac
Downstream sequence
cttagaacatttttatgggtcttgaaacaCTTTTTCTTTTGGTCAACCAGGTTATTTGAAGCAGACTTCTGACTCTGTGCCACTTTTCCAGTTCTAAAAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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