Basic Information
VIS ID
TVIS30004189
Fusion event
HIV-CORO2A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
100912181/98149899 (Hg38)
End
100912181/98149899 (Hg38)
Orient
-
Location type
Intronic
Target gene
CORO2A
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-21-5p ; hsa-mir-6778-3p ; hsa-mir-6128 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6814-5p ; hsa-mir-3691-3p ; hsa-mir-4279 ; hsa-mir-8081 ; hsa-mir-1231 ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-516b-5p ; hsa-mir-7977 ; hsa-mir-3120-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-4267 ; hsa-mir-6736-3p ; hsa-mir-5588-3p ; hsa-mir-29b-2-5p ; hsa-mir-3187-3p ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-4755-3p ; hsa-mir-29b-1-5p ; hsa-mir-4507 ; hsa-mir-3940-5p
Nearest miRNA
hsa-let-7a-1/Upstream/786218; hsa-mir-12126/Downstream/79250;
Nearest TSS
ENST00000422679/Upstream/30687; ENST00000610463/Downstream/22985;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/30521, chr9-CpG: 24/Downstream/42105
Upstream sequence
ATTcctaggagtctgtgatgatagcaattaacatgtatctttgagctatttattatatttcaaaaagcccaaagagaatcacacattttatctaggatca
Downstream sequence
ggctgtgtaggACAAGTGAGtttctttttctctttcttttttttttttgagagagtctcgcactgttgcctgggctggatggagtgcagtggcgcgatct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate