Basic Information
VIS ID
TVIS30004192
Fusion event
HIV-LOC105376214 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
110932379/108170099 (Hg38)
End
110932379/108170099 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376214
Nearest miRNA
hsa-let-7a-1/Upstream/1569077; hsa-mir-12126/Downstream/876130;
Nearest TSS
ENST00000422679/Upstream/679617; ENST00000333999/Downstream/84721;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/452960, chr9-CpG: 67/Downstream/684941
Nearby gene
KLF4(No orient, 680378)
Upstream sequence
ACAAACCAGGGGGGACAAttaaaaatatggacactggagtcagcaggaagtggatttgaatcctgtgtctgcaacttagcaactacactatcttgagtaa
Downstream sequence
gttacttagttttgctgtgacttagtctcctcctccatgaaaAAAGAAACATAcatcagggaaatgcaattcataactacagtgagataccacttcccac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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